Computational olfaction
I train models on human odor ratings and test them on molecules the models have not seen before.
- Principal odor maps
- Mixture perception
- Odor intensity
Neuroscientist who writes a lot of code
I run experiments and build models to study why things smell the way they do. Most of the code I write is for checking one against the other.
01 Molecule → model → odor ratings
Currently
Wavelength tells you a lot about color. There is no equivalent measurement for smell. A molecule can smell different at another concentration, and two people may describe it differently. I collect those judgments and train models on them.
I train models on human odor ratings and test them on molecules the models have not seen before.
I write tests that run a model on new data and score the result.
I maintain the datasets and testing software used in several of these projects.
My PhD work was experimental. During my postdoc I started writing more modeling and data-analysis code. At ASU, human olfaction became the main subject.
2002—08
PhD in Neurobiology. I studied synaptic plasticity and activity in small networks of hippocampal neurons.
2008—13
As a postdoc, I recorded from the olfactory bulb in vivo and helped develop NeuroElectro.
2013—
I built tools for testing neuroscience models and worked on how humans and rodents perceive odors.
2022—
I joined the Principal Odor Map project at Google Research and now lead neuroscience at Osmo.
The Principal Odor Map
We asked a trained panel to describe 400 new molecules, then gave the same job to the model. It performed about as well as the median panelist. I focused on the experimental design and on making sure the predictions and measurements could be compared fairly.
Much of this software exists because I needed to know where a number came from and whether it had changed.
The DREAM challenge gave the same prediction problem to teams around the world. In 2020, the Global Consortium for Chemosensory Research ran a survey in 32 languages and found that recent smell loss was a strong predictor of COVID-19.
Get in touch
If your project involves smell, there’s a good chance I’ll want to hear about it.